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Generate a section with dimred plots used in some RMarkdown files.

Source: R/html.R
generate_cell_annotation_plots_section.Rd

The hierarchy is composed of tabsets:

  • Selected annotation reference

    • Dimred plots (UMAP, t-SNE, PCA)

Usage

generate_cell_annotation_plots_section(
  dimred_plots_cell_annotation_files,
  cell_annotation_diagnostic_plots,
  dimred_plots_rel_start = ".",
  cell_annotation_diagnostic_plots_rel_start = ".",
  main_header = "Cell annotation",
  main_header_level = 1,
  text = NULL
)

Arguments

dimred_plots_cell_annotation_files

A tibble.

cell_annotation_diagnostic_plots

A tibble or NULL.

dimred_plots_rel_start, cell_annotation_diagnostic_plots_rel_start

A character scalar: relative start of path to directory with dimred plots, selected markers or cell annotation diagnostic plots PDFs. See the Relative links section in create_a_link().

main_header

A character scalar: text of the main header.

main_header_level

A numeric scalar: level of the main header.

text

A character text: additional text to be displayed on top of the section.

Value

Invisibly NULL.