Get a subplan for cell annotation via SingleR

Get a subplan for cell annotation via SingleR

Usage

get_cell_annotation_subplan(
  sce_target_name,
  sce_dimred_plots_target_name,
  cell_annotation_sources,
  cell_annotation_out_dir,
  report_dimred_names,
  dimred_plots_out_dir,
  do_heatmaps_
)

Arguments

sce_target_name, sce_dimred_plots_target_name

A character scalar: name of target representing a SCE object that will be used for cell annotation or dimred plots.

cell_annotation_sources

A tibble with cell annotation parameters.

cell_annotation_out_dir

A character scalar: output directory for diagnostic plots.

report_dimred_names

A character vector: dimred names for plots.

dimred_plots_out_dir

A character scalar: output directory for dimred plots.

do_heatmaps_

A logical scalar: if TRUE, make heatmaps annotated by predicted cell types and cluster memberships.

Value

drake::drake_plan()