Get a subplan for dimensionality reduction plots of selected variables.
Source:R/plans_common.R
get_dimred_plots_other_vars_subplan.RdGet a subplan for dimensionality reduction plots of selected variables.
Usage
get_dimred_plots_other_vars_subplan(
sce_target_name,
report_dimred_plots_other,
report_dimred_names,
dimred_plots_out_dir
)Arguments
- sce_target_name
A character scalar: name of target that stores SCE object, which will be used for plotting.
- report_dimred_plots_other
A character vector: variables in
colData(<sce_target_name>)to plot.- report_dimred_names
A character vector: dimred names for plotting (
"pca","tsne","umap").- dimred_plots_out_dir
A character scalar: output directory to save PDFs into.