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Make a tibble with integration methods and their parameters.

Source: R/integration_integration.R
integration_methods_df_fn.Rd

Make a tibble with integration methods and their parameters.

Usage

integration_methods_df_fn(integration_methods, hvg_int, hvg_int_with_cc = NULL)

Arguments

integration_methods

A named list of integration methods. See the INTEGRATION_METHODS parameter in 01_integration.yaml config for more details.

hvg_int

(input target) A named list of HVG data for each SingleCellExperiment object. Depending on settings, it may have CC-related HVGs removed.

hvg_int_with_cc

(input target) NULL or a named list of HVG data for each SingleCellExperiment object. Depending on settings, it may have all genes (including CC-related) included.

Value

A tibble. Output target: integration_methods_df