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Make dimred plots for each marker source defined in CLUSTER_MARKERS_SOURCES (cluster_markers.yaml config) or CONTRASTS_SOURCES (contrasts.yaml config).

Source: R/markers.R
markers_dimred_plots.Rd

Make dimred plots for each marker source defined in CLUSTER_MARKERS_SOURCES (cluster_markers.yaml config) or CONTRASTS_SOURCES (contrasts.yaml config).

Usage

markers_dimred_plots(sce_final_norm_clustering, markers_dimred_plots_params)

Arguments

sce_final_norm_clustering

A SingleCellExperiment object with computed dimreds and clusterings.

markers_dimred_plots_params

A tibble. See cluster_markers_dimred_plot_params or contrasts_dimred_plot_params for details.

Value

A modified markers_dimred_plots_params tibble with appended plot column (list of ggplot2 objects). See cluster_markers_dimred_plots or contrasts_dimred_plots target for details.