Calculate and run PAGE annotation.

Calculate and run PAGE annotation.

Usage

run_page_man_annotation(
  sign_matrix,
  sce,
  values = "logcounts",
  scale = NULL,
  overlap = 5,
  reverse_log_scale = FALSE,
  selected_annotation = NULL,
  output_enrichment = "zscore"
)

Arguments

sign_matrix

precalculated signature matrix

sce

A SingleCellExperiment object

values

A expresion indicating which values use, logcounts as default