Create a named list of cell labels returned from SingleR::SingleR().

SingleR::SingleR() returns three types of cell labels. In the returned list from this function, names of those are prefixed by a reference dataset's name and modified such that:

• first.labels ("raw" labels) -> <reference_name>_labels_raw

• labels (fine-tuned, unpruned labels) -> <reference_name>_labels

• pruned.labels (fine-tuned and pruned labels) -> <reference_name>_labels_pruned

Pruned labels contain NAs for low quality labels.

Usage

cell_annotation_labels_fn(cell_annotation)

Arguments

cell_annotation

(input target) A tibble.

Value

A named list. Output target: cell_annotation_labels