Download PBMC example data from 10x Genomics. — download_example_data • scdrake

Those data are files for raw feature barcode matrices.

download_pbmc1k(): PBMC 1k dataset (v3 chemistry, Cell Ranger 3.0.0)
download_pbmc3k(): PBMC 3k dataset (v2 chemistry, Cell Ranger 1.1.0)

All credits go to 10x Genomics. Visit https://www.10xgenomics.com/resources/datasets for more information.

Usage

download_pbmc1k(out_dir, ask = TRUE, verbose = getOption("scdrake_verbose"))

download_pbmc3k(out_dir, ask = TRUE, verbose = getOption("scdrake_verbose"))

Arguments

out_dir: A character scalar: path to directory to which will be data downloaded and extracted. Will be automatically created if it does not exist.
ask: A logical scalar: if TRUE, ask before download.
verbose: A logical scalar: if TRUE, be verbose. The default value is obtained from getOption("scdrake_verbose").

Value

A vector of downloaded files (invisibly).