Skip to contents

scdrake 1.6.0

Get started
Integration pipeline guide
Pipeline overview
Spatial extension
FAQ & Howtos
Articles

Guides
Using the Docker image 02 Integration pipeline guide Advanced topics Extending the pipeline drake basics

General information
Pipeline overview FAQ & Howtos Command line interface scdrake config internals Environment variables Spatial extension

General configs
Pipeline config Main config

Single-sample pipeline stages
Input and quality control stage (`01_input_qc`) Normalization and clustering stage (`02_norm_clustering`)

Integration pipeline stages
Integration stage (`01_integration`) Post-integration clustering stage (`02_int_clustering`)

Common stages
Cluster markers stage (`cluster_markers`) Contrasts stage (`contrasts`)
Reference
Changelog

Get a path to the temporary directory according to the OS.

Source: R/utils.R

get_tmp_dir.Rd

Source: https://stackoverflow.com/questions/16474696/read-system-tmp-dir-in-r

Usage

get_tmp_dir()

Developed by Jiri Novotny, Jan Kubovciak, Lucie Pfeiferova, Michal Kolar.

Site built with pkgdown 2.0.6.

Using preferably template.