Make dimred plots for each marker source defined in CLUSTER_MARKERS_SOURCES (cluster_markers.yaml config) or CONTRASTS_SOURCES (contrasts.yaml config).

Make dimred plots for each marker source defined in CLUSTER_MARKERS_SOURCES (cluster_markers.yaml config) or CONTRASTS_SOURCES (contrasts.yaml config).

Usage

markers_dimred_plots(
  sce_final_norm_clustering,
  markers_dimred_plots_params,
  spatial = FALSE
)

Arguments

sce_final_norm_clustering

A SingleCellExperiment object with computed dimreds and clusterings.

markers_dimred_plots_params

A tibble. See cluster_markers_dimred_plot_params or contrasts_dimred_plot_params for details.

Value

A modified markers_dimred_plots_params tibble with appended plot column (list of ggplot2 objects). See cluster_markers_dimred_plots or contrasts_dimred_plots target for details.