Make plots of top markers.

Make plots of top markers.

Usage

markers_plots_files(
  sce_dimred,
  markers_plots_top,
  save = TRUE,
  dry = FALSE,
  spatial = FALSE,
  return_type = c("file", "plot", "tibble")
)

Arguments

sce_dimred

A SingleCellExperiment object with computed dimreds.

markers_plots_top

A tibble, output from markers_plots_top(). See cluster_markers_plots_top or contrasts_plots_top target for details.

save

A logical scalar: if TRUE, save each plot to markers_top$out_file.

dry

A logical scalar: if TRUE, do not make plots and just create empty files.

return_type

A character scalar:

• "file": return markers_top$out_file.

• "plot": return list of marker plots.

• "tibble": return a modified markers_plots_top tibble with appended marker_plot column (list of marker plots).

Value

See the return_type argument. See cluster_markers_plots_files or contrasts_plots_files target for details.

See also

marker_plot()