Skip to contents

Assign cell cycle phase to cells.

Source: R/single_sample_norm_clustering.R
sce_cc_fn.Rd

This is a wrapper around Seurat::CellCycleScoring().

Usage

sce_cc_fn(
  sce_final_input_qc,
  cc_genes,
  data = NULL,
  cc_eval = TRUE,
  spatial = TRUE
)

Arguments

sce_final_input_qc

(input target) A SingleCellExperiment object.

cc_genes

(input target) A dataframe.

data

Passed to Seurat::as.Seurat().

Value

A modified sce_final_input_qc objects with columns appended to colData(): phase, s_score, g2m_score, cc_difference. Output target: sce_cc