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Calculate t-SNE and UMAP for each integration method result (SingleCellExperiment object).

Source: R/integration_integration.R
sce_int_dimred_df_fn.Rd

Calculate t-SNE and UMAP for each integration method result (SingleCellExperiment object).

Usage

sce_int_dimred_df_fn(dimred_params_df, BPPARAM = BiocParallel::SerialParam())

Arguments

dimred_params_df

(input target) A tibble: derived from sce_int_pca_df and integration_methods_df targets. Dimred parameters are defined for each integration method in INTEGRATION_METHODS parameter in 01_integration.yaml config.

BPPARAM

A BiocParallel::BiocParallelParam object.

Value

A modified dimred_params_df tibble with appended SingleCellExperiment object with computed PCA. Output target: sce_int_dimred_df