Skip to contents

Subset cells in a SingleCellExperiment object to non-empty ones and add corresponding statistics.

Source: R/single_sample_input_qc.R
sce_valid_cells_fn.Rd

Subset cells in a SingleCellExperiment object to non-empty ones and add corresponding statistics.

Usage

sce_valid_cells_fn(sce_raw, empty_droplets, empty_droplets_fdr_threshold)

Arguments

sce_raw

(input target) A SingleCellExperiment object.

empty_droplets

(input target) A DataFrame object returned from DropletUtils::emptyDrops().

empty_droplets_fdr_threshold

A numeric scalar: threshold value for FDR of a cell being empty.

Value

A subsetted sce_raw object. Output target: sce_valid_cells